Integrating
High-Performance Computing (HPC) into an academic environment is less about
hardware and more about "Peopleware." The most powerful
supercomputer is useless if domain scientists (biologists, sociologists,
chemists) find the learning curve too steep to climb.
To achieve
optimal outcomes, you must bridge the gap between Enterprise IT (keeping
the lights on) and Research Science (discovering the unknown). Here is a
strategic framework for academic HPC integration.
1. The
Human Infrastructure: Research Facilitators
Traditional
IT support ("My email is broken") fails in HPC. You need a
specialized role: the Research Facilitator or Research Software
Engineer (RSE).
- The Role: These are
"bilingual" staff who speak both Science (they understand
what a genome pipeline is) and Systems (they know why the pipeline
crashed the node).
- The
Engagement Model:
- Office Hours: Hold weekly "Walk-in
Clinics" where researchers can bring broken code.
- Embedded RSEs: Instead of sitting in the
data center, place an RSE physically in the Chemistry or Engineering
building 2 days a week.
- The "Concierge"
Service: For
new PIs (Principal Investigators), offer a 1-hour white-glove onboarding
session to port their specific workflow to the cluster.
2.
Curriculum Integration: "HPC in the Classroom"
To build a
sustainable user base, you must catch students before they start their
PhD research.
- The "Invisible" HPC: For undergraduate classes
(e.g., "Intro to Bioinformatics"), do not force students to
learn SSH/Linux immediately.
- Strategy: Use Open OnDemand to
spawn Jupyter Notebooks or RStudio instances.
The students run code on the supercomputer via a web browser, often
without realizing it.
- The "Carpentries"
Partnership:
Adopt the Software Carpentry and Data Carpentry curriculum
standards. These are globally recognized, 2-day
workshops that teach "Unix Shell," "Git," and
"Python for Data" specifically for researchers.
- Graduate Certification: Create a "Certificate in
Computational Science" that can be attached to any PhD program,
incentivizing students to master the cluster.
3. The
"Condo" Funding Model
Integrating
HPC into university finances is critical for sustainability. The most
successful academic model is the "Condo" (Condominium) Model.
- The Concept: The University funds the
"Infrastructure" (Racks, Power, Cooling, Networking, Head Nodes,
Storage). PIs use grant money to buy the "Compute Nodes" (the
tenants).
- The
Incentive:
- PI Benefit: They get professional
management of their hardware for free.
- University Benefit: When the PI isn't using their
nodes, the scheduler scavenges the idle cycles for the general student
queue (the "Backfill").
- Lifecycle Policy: Make it clear that the
"Condo" agreement lasts for the warranty period (usually 5
years), after which the hardware is retired or moved to a low-priority
queue.
4.
Improving "Time-to-Science"
The metric
for success shouldn't be "CPU Utilization" (IT metric), but "Time-to-Science"
(Academic metric).
- Grant Support (Pre-Award): Provide PIs with
"Boilerplate Text" describing the facility. A strong Facilities
Statement increases their chances of winning NIH/NSF grants.
- Quick-Start Templates: Maintain a repository of job
scripts for the top 10 applications (VASP, Gaussian, TensorFlow, GROMACS).
A user should be able to type copy-job-template tensorflow
and just fill in their input filename.
- The "Debug"
Partition:
Always reserve a small set of nodes with a 30-minute time limit and high
priority. This allows researchers to test if their code compiles
instantly, rather than waiting 4 hours in the main queue just to see a
syntax error.
5.
Measuring & Marketing Impact
To secure
continued funding from the Provost/Dean, you must speak the language of
university administration.
- The Acknowledgement Policy: require users to add a
standard sentence to their papers: "Computations were performed on
the [Cluster Name] at [University]."
- The
"Impact Dashboard":
- Track Grant Dollars
Supported (Cross-reference users with grant awards).
- Track Degrees Awarded
(PhD students who used the cluster).
- Track Publications
(using the acknowledgment text).
- Science Stories: Once a quarter, interview a
researcher who used the cluster to do something cool. Write a "Plain
English" blog post about it. Send this to the University PR office.
6. Integration Checklist for Directors
|
Domain
|
Action Item
|
|
People
|
Hire at
least one Facilitator for every ~150 active users.
|
|
Training
|
Schedule
"Intro to Linux" workshops at the start of every semester.
|
|
Access
|
Implement
Federated Identity (InCommon) so external
collaborators can log in easily.
|
|
Finance
|
Draft a
clear "Condo Buy-in" Memorandum of Understanding (MOU).
|
|
Policy
|
Create a
"Fair Share" scheduling policy that prevents one lab from
monopolizing the resource.
|